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--- dev:plotting_elem_counts [2014/10/26 20:53] – created jvick3
+++ dev:plotting_elem_counts [2014/10/26 21:01] (current) – jvick3
@@ Line 1: / Line 1: @@
- The //plot_element_counts.py// script:
+The //plot_element_counts.py// script.  If you get an error that it cannot find the module "matplotlib" or something, it's probably not installed.  This fixes that on Ubuntu:
- #!/usr/bin/env python
+sudo apt-get install python-matplotlib
- # Reads .mfs files in a directory and makes plots of
+Example usage:
- # particular elements (Data, Isolator) in them
- # Work-in-progress.
- import sys
+./plot_element_counts.py /tmp/xxx/tbd/data.dat "a nice title" "Data" "Creg" "Dreg"
- import matplotlib.pyplot as plt
- # Idea: keep a mapping somewhere (file?) of Element name to color
+<code python>
- #      to use with plot
+#!/usr/bin/env python
- def plot_mfs_data(filePath, plot_title, elem_names):
+# This script plots the counts of the specified elements against AEPS,
-     with open(filePath, "r") as inFile:
+# each plot having the specified title.
+import sys
+import matplotlib.pyplot as plt
+# Idea: keep a mapping somewhere (file?) of Element name to color
+#      to use with plot
+def plot_mfs_data(filePath, plot_title, elem_names):
+    with open(filePath, "r") as inFile:
-         # Read header and AEPS column
+        # Read header and AEPS column
-         header = inFile.readline().split()
+        header = inFile.readline().split()
-         header.remove("#") # there is a column named as "# AEPS", bad
+        header.remove("#") # there is a column named as "# AEPS", bad
-         AEPS_index = header.index("AEPS")
+        AEPS_index = header.index("AEPS")
-         lines = inFile.readlines()
+        lines = inFile.readlines()
-         AEPS = []
+        AEPS = []
-         for l in lines:
+        for l in lines:
-             entries = l.split()
+            entries = l.split()
-             AEPS.append(entries[AEPS_index])
+            AEPS.append(entries[AEPS_index])
-         ##############################
+        ##############################
-         # Read data lines of file, get element counts, make plots for each
+        # Read data lines of file, get element counts, make plots for each
-         fig_index = 0
+        fig_index = 0
-         for elem in elem_names:
+        for elem in elem_names:
-             col_index = header.index(elem)
+            col_index = header.index(elem)
-             counts = []
+            counts = []
-             for l in lines:
+            for l in lines:
-                 entries = l.split()
+                entries = l.split()
-                 counts.append(entries[col_index])
+                counts.append(entries[col_index])
-             # Make plots for this Element
+            # Make plots for this Element
-             fig = plt.figure(fig_index)
+            fig = plt.figure(fig_index)
-             fig_index += 1
+            fig_index += 1
-             plt.plot(AEPS, counts)
+            plt.plot(AEPS, counts)
-             plt.xlabel('AEPS')
+            plt.xlabel('AEPS')
-             plt.ylabel("Number of " + elem)
+            plt.ylabel("Number of " + elem)
-             plt.title(plot_title)
+            plt.title(plot_title)
-         # Show all figures/plots
+        # Show all figures/plots
-         plt.show()
+        plt.show()
- # When run as a script
+# When run as a script
- if __name__ == "__main__":
+if __name__ == "__main__":
-     if len(sys.argv) < 4:
+    if len(sys.argv) < 4:
-         print "Usage: <tbd data file> <plot_title> <list of Element names>"
+        print "Usage: <tbd data file> <plot_title> <list of Element names>"
-     else:
+    else:
-         plot_mfs_data(sys.argv[1], sys.argv[2], sys.argv[3:])
+        plot_mfs_data(sys.argv[1], sys.argv[2], sys.argv[3:])
+</code>